Tuesday, December 1, 2009
Monday, November 30, 2009
Wednesday, November 18, 2009
Immunoinformatics Databases and Tools for Microarray and Gene Expression Analyses
Name
URL
Description
RefDIC
http://ping.fm/xq5mo
Database of mRNAs and proteins of the immune system
Immunological Genome Project
http://ping.fm/7wNUp
Microarray analyses in mouse immune system
Gene Expression Omnibus (GEO)
http://ping.fm/bAZ7I
Gene expression and microarray resource
Microarray Informatics at EBI
http://ping.fm/TzIEk
Microarray data analyses
NHGRI Microarray Project
http://ping.fm/YI58A
Resources for arrays
Bibliography on Microarray Data Analysis
http://ping.fm/vbem0
Links, publications of microarray data analysis
Stanford Microarray [...] http://digg.com/u1Ge7F
Databases and Tools for Analysis of Pathways and Interactions of the Immune System
Name
URL
Description
InnateDB
http://www.innatedb.ca/
Interactions and pathways in
innate immune responses
Innate Immune Database (IIDB)
http://ping.fm/9TJc4
Genes involved with immune responses
JenPep
http://ping.fm/Z3VVB
Protein-peptide interactions in the immune system
InnateImmunity-SystemsBiology.org
http://ping.fm/L2ma3
Innate immunity, inflammation, septic shock
Pathogen Interaction Gateway (PIG)
http://ping.fm/U2mqG
Host-pathogen, protein-protein interactions
VirusMINT
http://ping.fm/wLfFF
Human-viral protein interactions
NetPath
http://www.netpath.org/
Pathways in humans, including immune pathways
KEGG
http://ping.fm/ntBJc
Pathway maps, tables, catalogs
Reactome
www.reactome.org/
A pathway database
HPRD
http://www.hprd.org/
Pathways and interaction database
GenMapp
http://www.genmapp.org/
Pathway tools
BioCyc
http://www.biocyc.org/
Pathway databases
Pathguide
http://ping.fm/6JWFL
The pathway resource [...] http://digg.com/u1Ge7E
Biomedical Standards and Terminologies for Translational Bioinformatics Studies
Name
URL
Content
Health Level Seven (HL7)
http://www.hl7.org/
Standards of health information technology
GELLO
http://ping.fm/lwB1z
A guideline query language
GuideLine Interchange Format (GLIF)
http://ping.fm/dbiXe
For sharing of clinical guidelines
Unified Medical Language System (UMLS)
http://ping.fm/Bbecx
Terminology and coding standards
Systematized Nomenclature of Medicine -Clinical Terms (SNOMED-CT)
http://ping.fm/NbOeYSnomed/snomed_main.html
A clinical terminology
International Classification of Disease (ICD)
http://ping.fm/alKQ6
Disease classifications
Current Procedural Terminology (CPT-4)
http://ping.fm/5K3qn
Terms of medical, surgical, and diagnostic services
Logical Observation Identifiers Names and Codes [...] http://digg.com/u1Ge7G